GS_00DKTU0.1

Display Name: USA/GS_00DKTU0.1/2022-10-26
G. A. Santiago, G. Gonzalez-Morales, B. Flores, K. Charriez, J. L. Munoz-Jordan, S. Bunch, N. Cano, R. Jaber, A. Morrison, C. Panzera, J. Vergara, R. Zimler, L. Heberlein & E. Kopp

Submission details

Submission ID
OQ445966.1
Submitting group
Date submitted
2025-07-07 07:49:50 UTC
Date released
2025-07-07 08:17:50 UTC

Authors

Author affiliations
Centers for Disease Control and Prevention, Dengue Branch

Clade & Lineage

Clade
4II_B.1.2

Alignment states and QC metrics

Completeness
93.89%
Length
10163
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
298
Total unknown nucs
165

Sample details

Collection country
USA
Collection subdivision level 1
Florida
Collection date
2022-10-26
Isolate name
US/DB409/2022

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession
NCBI release date
2023-02-21
NCBI update date
2023-02-21

Nucleotide mutations

Mutations called relative to the NC_002640.1 reference

Substitutions

  • T584C
  • C606T
  • G674A
  • A694G
  • G698T
  • A809G
  • C839T
  • C899T
  • T1076C
  • C1129T
  • T1211C
  • C1232T
  • G1238A
  • T1295C
  • T1323C
  • A1388G
  • T1412C
  • G1451A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002640.1 reference

    Substitutions

    E

  • E:S64L
  • E:K174E
  • E:A222T
  • E:I351V
  • E:S354A

    • NS1

  • NS1:A6V
  • NS1:K11R
  • NS1:T105I
  • NS1:V108A
  • NS1:L153F
  • NS1:I212M
  • NS1:K214R
  • NS1:S239T
  • NS1:D290N

    • NS2A

  • NS2A:Q2P
  • NS2A:S5P
  • NS2A:V35A

    • NS2B

  • NS2B:V74I

    • NS3

  • NS3:K14Q
  • NS3:V155I
  • NS3:P435T
  • NS3:E558K
  • NS3:R594K

    • NS4B

  • NS4B:V18A
  • NS4B:V71I
  • NS4B:M84V

    • NS5

  • NS5:D47E
  • NS5:K175N
  • NS5:H247Y
  • NS5:K649R
  • NS5:I692V
  • NS5:T826I
  • NS5:H832Q
  • NS5:S856A

    • prM

  • prM:E85G
    • Deletions
    None
    Insertions
    None