GS_00DG79Y.1

Display Name: USA/GS_00DG79Y.1/2025-06-02
A. P. Rothstein, S. Collins, G. Muir, A. Simas, B. Lu, B. Cosca, B. Girinathan, P. Leeson, A. M. Plocik & B. Simen

Submission details

Submission ID
PV831997.1.seg1/PV831996.1.seg3/PV831993.1.seg4/PV831995.1.seg6/PV831994.1.seg7
Submitting group
Date submitted
2025-06-25 21:39:38 UTC
Date released
2025-06-25 21:39:45 UTC

Authors

Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity

Clade

Clade HA
V1A.3a.2
Clade NA
B.7

Alignment states and QC metrics seg3

Completeness seg3
100.00%
Length seg3
2292
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
47
Total SNPs seg3
54
Total unknown nucs seg3
0

Alignment states and QC metrics seg4

Completeness seg4
98.46%
Length seg4
1847
Total ambiguous nucs seg4
0
Total deleted nucs seg4
9
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
54
Total unknown nucs seg4
0

Alignment states and QC metrics seg6

Completeness seg6
100.00%
Length seg6
1528
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
127
Total SNPs seg6
37
Total unknown nucs seg6
0

Alignment states and QC metrics seg7

Completeness seg7
100.00%
Length seg7
1155
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
8
Total SNPs seg7
18
Total unknown nucs seg7
0

Sample details

Collection country
USA
Collection subdivision level 1
Virginia
Collection date
2025-06-02
Isolate name
B/Virginia/GKISBBBF32062/2025

Host

Host name scientific
Homo sapiens
Host taxon id

INSDC

INSDC accession seg1
INSDC accession seg3
INSDC accession seg4
INSDC accession seg6
INSDC accession seg7
NCBI release date
2025-06-25

Alignment states and QC metrics seg1

Length seg1
2355

INSDC seg4

Lineage seg4
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg3

  • seg3:T111C
  • seg3:C114T
  • seg3:C117T
  • seg3:C282T
  • seg3:T339C
  • seg3:A351G
  • seg3:G414A
  • seg3:G549A
  • seg3:T604C
  • seg3:A618G
  • seg3:T654C
  • seg3:A759G
  • seg3:A771G
  • seg3:C813T
  • seg3:T861C
  • seg3:G867A
  • seg3:G888A
  • seg3:C897T

    • seg4

  • seg4:T81C
  • seg4:C252A
  • seg4:G267A
  • seg4:C270T
  • seg4:G297A
  • seg4:G312T
  • seg4:A318G
  • seg4:A351G
  • seg4:C375T
  • seg4:C378T
  • seg4:A427G
  • seg4:C441T
  • seg4:T444C
  • seg4:G457A
  • seg4:A463G
  • seg4:A484G
  • seg4:C509T
  • seg4:T510C

    • seg6

  • seg6:C4T
  • seg6:C7T
  • seg6:T9C
  • seg6:C125A
  • seg6:A153G
  • seg6:T154G
  • seg6:T212C
  • seg6:A358G
  • seg6:A373G
  • seg6:C394T
  • seg6:C399T
  • seg6:A504G
  • seg6:C519T
  • seg6:A660C
  • seg6:T714A
  • seg6:G765A
  • seg6:C849T
  • seg6:T879C

    • seg7

  • seg7:C33T
  • seg7:C46T
  • seg7:A83G
  • seg7:T125A
  • seg7:G316A
  • seg7:A419G
  • seg7:A434C
  • seg7:C455T
  • seg7:G482A
  • seg7:G500T
  • seg7:G521A
  • seg7:G536A
  • seg7:A566G
  • seg7:C656T
  • seg7:T781C
  • seg7:T784C
  • seg7:A919G
  • seg7:A967G
    • Deletions
    seg4:562-570
    Insertions
    ins_seg7:0:TTCTTA, ins_seg7:1147:AA, ins_seg6:0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_seg6:1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTGTTTGAACAATTGTCCTTGCTAAACTTAATTGTTTCTGAAAAAT, ins_seg3:2241:AGAAAC, ins_seg3:2245:ATCAAAAATGCTCGTGTTTCTACT, ins_seg3:0:GCGTTTGATTTATCATA

    Amino acid mutations

    Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

    Substitutions

    HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:E183K
  • HA1:G184E
  • HA1:N197E
  • HA1:K203R
  • HA1:R279K

    • HA2

  • HA2:G181E

    • M1

  • M1:T15I
  • M1:R105K

    • NA

  • NA:P3S
  • NA:P42Q
  • NA:L52V
  • NA:V71A
  • NA:I120V
  • NA:N125D
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:G378E
  • NA:D384G
  • NA:A395V
  • NA:V401I

    • PA

  • PA:F202L
  • PA:K312R
  • PA:T352A
  • PA:M376V
  • PA:S530T
  • PA:R540K
  • PA:G708A
  • PA:F709V
  • PA:N714S
  • PA:I723V
    • Deletions
    HA1:162-164
    Insertions
    None