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GS_00DEKGA.1
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Display Name: Ireland/GS_00DEKGA.1/2025-04-16
Carr, M.;
Bennett, C.;
Banka, W.;
Fahey, L.;
Rice, A.;
Dean, J.;
Hare, D.;
De Gascun, C. F.
Submission details
Submission ID
OZ262356.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-04 04:49:28 UTC
Date released
2025-06-04 04:49:43 UTC
Authors
Author affiliations
UCD National Virus Reference Laboratory, Dublin, Co. Dublin
INSDC
Bioproject accession
PRJEB90084
Biosample accession
SAMEA118424696
INSDC accession
OZ262356.1
NCBI release date
2025-06-03
NCBI update date
2025-06-04
Alignment states and QC metrics
Completeness
99.88%
Length
15205
Total ambiguous nucs
0
Total deleted nucs
5
Total frame shifts
0
Total inserted nucs
7
Total SNPs
138
Total unknown nucs
0
Sample details
Collection country
Ireland
Collection date
2025-04-16
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
B.D.E.1
Nucleotide mutations
Substitutions
G
513
T
G
579
A
C
984
T
C
998
A
T
1250
C
A
1315
G
A
1336
T
G
1385
A
G
1648
A
G
1732
A
T
1846
C
A
1984
G
C
2074
T
C
2198
T
T
2406
C
T
2457
C
C
2521
T
C
2554
T
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Deletions
973, 4586, 13501-13503
Insertions
ins_15092:ATAT, ins_3204:GAA
Amino acid mutations
Substitutions
F
F:
S
190
N
F:
S
211
N
F:
S
389
P
G
G:
A
74
V
G:
S
100
G
G:
T
131
A
G:
I
137
T
G:
P
140
L
G:
N
144
D
G:
P
214
S
G:
P
221
L
G:
I
252
T
G:
S
255
P
G:
K
256
N
G:
I
268
T
G:
S
275
P
G:
Y
285
H
L
L:
Y
125
C
L:
K
570
R
L:
R
1759
K
L:
T
1987
I
N
N:
V
97
I
P
P:
P
73
S
Deletions
L:1662
Insertions
None
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