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GS_00DEGEH.1
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Display Name: Ireland/GS_00DEGEH.1/2025-03-31
Carr, M.;
Bennett, C.;
Banka, W.;
Fahey, L.;
Rice, A.;
Dean, J.;
Hare, D.;
De Gascun, C. F.
Submission details
Submission ID
OZ262273.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-04 04:26:39 UTC
Date released
2025-06-04 04:27:21 UTC
Authors
Author affiliations
UCD National Virus Reference Laboratory, Dublin, Co. Dublin
INSDC
Bioproject accession
PRJEB90083
Biosample accession
SAMEA118424598
INSDC accession
OZ262273.1
NCBI release date
2025-06-03
NCBI update date
2025-06-04
Alignment states and QC metrics
Completeness
100.00%
Length
15233
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
9
Total SNPs
222
Total unknown nucs
0
Sample details
Collection country
Ireland
Collection date
2025-03-31
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.3
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
59
C
T
66
A
A
67
G
G
74
A
C
90
T
C
183
T
T
231
C
G
587
T
T
619
C
G
637
A
C
1012
T
A
1024
G
G
1034
A
G
1050
A
G
1077
A
A
1080
G
T
1359
C
T
1413
A
Show more
Deletions
4592
Insertions
ins_15115:T, ins_15053:CAAAAA, ins_3154:AA
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
T
12
I
F:
T
326
I
G
G:
H
67
N
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
G
106
R
G:
T
113
I
G:
S
121
N
G:
V
131
D
G:
I
134
K
G:
R
151
Q
G:
N
178
G
G:
K
221
R
G:
G
224
E
G:
S
243
I
G:
H
258
Q
G:
K
262
E
G:
I
265
L
G:
H
266
L
Show more
L
L:
N
43
D
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
835
M
L:
L
1438
Q
L:
D
1644
E
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
R
2117
K
N
N:
V
352
A
NS1
NS1:
G
2
D
P
P:
V
43
I
P:
L
55
P
P:
T
92
M
Deletions
None
Insertions
None
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