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GS_00DEGCM.1
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Display Name: Ireland/GS_00DEGCM.1/2025-03-29
Carr, M.;
Bennett, C.;
Banka, W.;
Fahey, L.;
Rice, A.;
Dean, J.;
Hare, D.;
De Gascun, C. F.
Submission details
Submission ID
OZ262271.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-04 04:26:39 UTC
Date released
2025-06-04 04:27:21 UTC
Authors
Author affiliations
UCD National Virus Reference Laboratory, Dublin, Co. Dublin
INSDC
Bioproject accession
PRJEB90083
Biosample accession
SAMEA118424599
INSDC accession
OZ262271.1
NCBI release date
2025-06-03
NCBI update date
2025-06-04
Alignment states and QC metrics
Completeness
100.00%
Length
15231
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
8
Total SNPs
234
Total unknown nucs
0
Sample details
Collection country
Ireland
Collection date
2025-03-29
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.1
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
66
A
A
67
G
C
90
T
T
142
C
C
183
T
G
198
A
T
210
C
G
377
T
A
399
G
A
500
T
C
528
A
G
551
A
G
555
A
T
659
C
G
664
A
T
697
C
A
736
G
T
922
C
Show more
Deletions
4175, 4592
Insertions
ins_2300:AAAAAAAT
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
S
377
N
G
G:
H
90
Y
G:
L
101
F
G:
I
114
T
G:
T
118
I
G:
I
134
K
G:
L
142
S
G:
P
217
T
G:
P
222
L
G:
G
224
E
G:
S
243
I
G:
G
254
E
G:
K
262
E
G:
I
265
L
G:
Y
273
H
G:
D
284
G
G:
Y
304
H
G:
T
320
A
L
L:
N
143
D
L:
P
171
L
L:
T
179
S
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
I
1653
V
L:
K
1661
N
L:
N
1723
S
L:
E
1725
G
L:
K
1726
R
L:
S
1789
F
L:
H
1897
N
L:
M
2038
L
L:
Y
2163
N
M
M:
M
43
I
N
N:
V
352
A
NS1
NS1:
G
103
V
P
P:
L
55
P
SH
SH:
I
38
S
Deletions
None
Insertions
None
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