GenSpectrum
RSV-A
Influenza B/Victoria
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
Browse
GenSpectrum
Browse
Docs
API docs
GS_00DEFYF.1
Download
Download FASTA
Download metadata TSV
Display Name: Ireland/GS_00DEFYF.1/2025-03-31
Carr, M.;
Bennett, C.;
Banka, W.;
Fahey, L.;
Rice, A.;
Dean, J.;
Hare, D.;
De Gascun, C. F.
Submission details
Submission ID
OZ262254.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-04 04:26:39 UTC
Date released
2025-06-04 04:27:21 UTC
Authors
Author affiliations
UCD National Virus Reference Laboratory, Dublin, Co. Dublin
INSDC
Bioproject accession
PRJEB90083
Biosample accession
SAMEA118424600
INSDC accession
OZ262254.1
NCBI release date
2025-06-03
NCBI update date
2025-06-04
Alignment states and QC metrics
Completeness
98.65%
Length
15196
Total ambiguous nucs
0
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
2
Total SNPs
231
Total unknown nucs
179
Sample details
Collection country
Ireland
Collection date
2025-03-31
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.5.2
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
66
A
A
67
G
C
90
T
A
135
T
C
183
T
T
246
C
G
555
A
C
643
T
T
697
C
T
922
C
G
934
A
A
940
C
T
1004
C
A
1009
G
A
1021
G
T
1028
C
G
1050
A
A
1051
C
Show more
Deletions
4592, 7516-7518
Insertions
ins_4174:A, ins_4533:A
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
A
103
T
F:
T
122
A
G
G:
A
57
V
G:
P
71
L
G:
Q
82
H
G:
H
90
Y
G:
L
101
F
G:
I
134
K
G:
Q
140
R
G:
P
206
Q
G:
K
209
R
G:
G
224
E
G:
T
231
I
G:
S
243
I
G:
L
248
I
G:
K
262
E
G:
I
265
L
G:
S
267
L
G:
S
283
P
G:
D
284
G
Show more
L
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
L
1438
Q
L:
N
1723
G
L:
E
1725
G
L:
K
1727
R
L:
G
1731
D
L:
L
1746
S
L:
T
1942
I
L:
V
1943
D
M
M:
M
73
L
N
N:
I
104
V
N:
V
352
A
P
P:
L
55
P
P:
T
69
I
P:
E
239
D
Deletions
None
Insertions
None
Load sequences