GenSpectrum
RSV-A
Influenza B/Victoria
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
Browse
GenSpectrum
Browse
Docs
API docs
GS_00DEEJA.1
Download
Download FASTA
Download metadata TSV
Display Name: Ireland/GS_00DEEJA.1/2025-03-31
Carr, M.;
Bennett, C.;
Banka, W.;
Fahey, L.;
Rice, A.;
Dean, J.;
Hare, D.;
De Gascun, C. F.
Submission details
Submission ID
OZ262176.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-06-04 04:26:39 UTC
Date released
2025-06-04 04:27:21 UTC
Authors
Author affiliations
UCD National Virus Reference Laboratory, Dublin, Co. Dublin
INSDC
Bioproject accession
PRJEB90083
Biosample accession
SAMEA118424604
INSDC accession
OZ262176.1
NCBI release date
2025-06-03
NCBI update date
2025-06-04
Alignment states and QC metrics
Completeness
85.81%
Length
13753
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
2
Total SNPs
182
Total unknown nucs
687
Sample details
Collection country
Ireland
Collection date
2025-03-31
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.3
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
T
1359
C
A
1361
G
T
1413
A
T
1422
C
C
1788
T
C
1806
T
G
1968
A
T
2165
C
A
2392
G
C
2410
T
T
2416
C
T
2481
C
C
2592
T
A
2695
G
T
3045
C
C
3100
A
T
3109
C
C
3125
T
Show more
Deletions
None
Insertions
ins_3183:G, ins_3154:A
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
T
12
I
F:
A
23
T
F:
K
123
R
G
G:
N
66
T
G:
S
102
P
G:
T
113
I
G:
I
114
T
G:
L
115
P
G:
S
117
P
G:
V
131
D
G:
I
134
K
G:
N
178
G
G:
G
224
E
L
L:
N
37
D
L:
Y
598
H
L:
L
835
M
L:
D
969
G
L:
L
1438
Q
L:
T
1489
A
L:
S
1593
G
L:
T
1712
A
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
K
2064
R
L:
T
2069
A
N
N:
K
84
R
N:
V
352
A
P
P:
L
55
P
P:
T
92
M
Deletions
None
Insertions
None
Load sequences