GS_00DDBJF.1

Display Name: USA/GS_00DDBJF.1/2025-03-24
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV546052.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-28 03:14:42 UTC
Date released
2025-04-28 03:15:17 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN48059163
INSDC accession
PV546052.1
NCBI release date
2025-04-27
NCBI update date
2025-04-27
SRA run accession
SRR33217064

Alignment states and QC metrics

Completeness
93.15%
Length
15046
Total ambiguous nucs
1
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
222
Total unknown nucs
864

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-03-24
Isolate name
MN-MDH-RSVA-02716

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.5

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • A274G
  • C379T
  • T463C
  • A514T
  • G587A
  • A612G
  • A623G
  • G664A
  • A706G
  • A712G
  • G1050A
  • T1061C
  • T1218C
  • T1242C
  • T1320C
  • T1359C
    • Deletions
    4592
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:T122A

    • G

  • G:P71L
  • G:T89I
  • G:H90Y
  • G:L101F
  • G:T112A
  • G:S121G
  • G:P126S
  • G:I134K
  • G:P206Q
  • G:G224E
  • G:S243I
  • G:L248I
  • G:K253Q
  • G:G254R
  • G:K262E
  • G:I265L
  • G:S270P
  • G:P276Q

    • L

  • L:P171L
  • L:T179A
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:V1943D

    • NS1

  • NS1:N69D

    • NS2

  • NS2:H5R
  • NS2:T9A

    • P

  • P:L55P

    • SH

  • SH:C45Y
    • Deletions
    None
    Insertions
    None