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GS_00DDBDS.1
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Display Name: USA/GS_00DDBDS.1/2025-03-20
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV546047.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-28 03:14:42 UTC
Date released
2025-04-28 03:15:17 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN48059158
INSDC accession
PV546047.1
NCBI release date
2025-04-27
NCBI update date
2025-04-27
SRA run accession
SRR33217069
Alignment states and QC metrics
Completeness
97.07%
Length
15048
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
222
Total unknown nucs
267
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-03-20
Isolate name
MN-MDH-RSVA-02711
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
A.D.3.4
Nucleotide mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
C
90
T
C
183
T
G
192
A
A
565
G
G
587
T
G
1034
A
G
1050
A
G
1077
A
T
1359
C
T
1413
A
T
1422
C
A
1623
G
C
1788
T
C
1806
T
T
2127
C
T
2145
C
T
2146
C
T
2165
C
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Deletions
None
Insertions
ins_3154:A
Amino acid mutations
Mutations called relative to the
NC_006432.1
reference
Substitutions
F
F:
T
12
I
F:
A
17
T
F:
F
114
Y
G
G:
P
71
L
G:
H
90
Y
G:
T
113
I
G:
V
131
D
G:
I
134
K
G:
K
149
N
G:
N
178
G
G:
K
204
R
G:
G
224
E
G:
S
243
I
G:
T
245
A
G:
H
258
Q
G:
K
262
E
G:
I
265
L
G:
H
266
L
G:
D
284
G
G:
E
295
G
G:
P
298
L
G:
S
299
G
L
L:
N
37
D
L:
P
171
L
L:
S
178
Y
L:
R
256
K
L:
Y
598
H
L:
N
599
S
L:
L
835
M
L:
I
1314
M
L:
L
1327
I
L:
L
1438
Q
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
N
1905
Y
L:
K
2064
R
L:
T
2069
A
N
N:
V
352
A
P
P:
L
55
P
P:
D
71
E
P:
T
92
M
Deletions
None
Insertions
None
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