Display Name: USA/GS_00DDAXQ.1/2025-03-26
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV546031.1
Date submitted
2025-04-28 03:14:42 UTC
Date released
2025-04-28 03:15:17 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
Biosample accession
INSDC accession
NCBI release date
2025-04-27
NCBI update date
2025-04-27
SRA run accession

Alignment states and QC metrics

Completeness
97.08%
Length
15060
Total ambiguous nucs
0
Total deleted nucs
7
Total frame shifts
0
Total inserted nucs
20
Total SNPs
237
Total unknown nucs
267

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-03-26
Isolate name
MN-MDH-RSVA-02695

Host

Host name scientific
Homo sapiens
Host taxon id

Clade & Lineage

Lineage
A.D.3

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • T203C
  • C216A
  • T276C
  • A327G
  • T372C
  • C411A
  • G587T
  • C589T
  • G1034A
  • T1035A
  • G1050A
  • G1077A
  • A1197T
  • T1359C
  • T1413A
  • T1422C
  • Deletions
    4174-4180
    Insertions
    ins_15115:TAATTTTTT, ins_3154:A, ins_3216:AAAAAAAGAT

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:T12I
  • F:R113K
  • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G106E
  • G:T113I
  • G:I114T
  • G:V131D
  • G:I134K
  • G:I141T
  • G:N160D
  • G:N178G
  • G:T210A
  • G:G224E
  • G:V225A
  • G:S243I
  • G:T245I
  • G:K253R
  • G:E257G
  • L

  • L:P171L
  • L:K213R
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:K960N
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:V1803A
  • N

  • N:V352A
  • NS1

  • NS1:V45A
  • P

  • P:L55P
  • P:T92M
  • SH

  • SH:V49A
  • Deletions
    None
    Insertions
    None