GS_00DD8S2.1

Display Name: USA/GS_00DD8S2.1/2025-03-13
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV546220.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-28 03:13:57 UTC
Date released
2025-04-28 03:14:10 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN48059331
INSDC accession
PV546220.1
NCBI release date
2025-04-27
NCBI update date
2025-04-27
SRA run accession
SRR33217106

Alignment states and QC metrics

Completeness
90.01%
Length
15138
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
2
Total SNPs
122
Total unknown nucs
1436

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-03-13
Isolate name
MN-MDH-RSVB-02884

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.E.1.1

Nucleotide mutations

Substitutions

  • A276G
  • G513T
  • G579A
  • C628T
  • C998A
  • T1333C
  • G1385A
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • C2382T
  • A2495C
  • A2500G
  • C2554T
  • C2691T
  • C2707T
  • G3438A
    • Deletions
    973, 4586
    Insertions
    ins_15092:AT

    Amino acid mutations

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:D385N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:D271G
  • G:S275P
  • G:Y285H
  • G:P304L

    • L

  • L:K570R
  • L:N590S
  • L:R1759K
  • L:Q1799H
  • L:C1848S
  • L:T1987I

    • N

  • N:V97I

    • NS1

  • NS1:K74E

    • P

  • P:N64T
  • P:T66A
    • Deletions
    None
    Insertions
    None