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GS_00DD8NA.1
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Display Name: USA/GS_00DD8NA.1/2025-03-11
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV546216.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-28 03:13:57 UTC
Date released
2025-04-28 03:14:10 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN48059327
INSDC accession
PV546216.1
NCBI release date
2025-04-27
NCBI update date
2025-04-27
SRA run accession
SRR33217111
Alignment states and QC metrics
Completeness
93.38%
Length
15134
Total ambiguous nucs
39
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
4
Total SNPs
227
Total unknown nucs
879
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-03-11
Isolate name
MN-MDH-RSVB-02880
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
B.D.E.1.5
Nucleotide mutations
Substitutions
A
56
G
G
62
C
T
63
A
T
68
C
C
72
T
C
77
T
G
86
A
A
95
G
T
102
C
T
110
C
C
116
T
T
143
C
T
161
A
T
163
A
T
164
G
C
165
T
G
167
A
A
176
T
Show more
Deletions
973, 4586
Insertions
ins_15092:ATAT
Amino acid mutations
Substitutions
F
F:
R
42
K
F:
L
125
P
F:
S
190
N
F:
S
211
N
F:
S
389
P
G
G:
A
74
V
G:
I
87
T
G:
L
91
F
G:
S
100
G
G:
T
131
A
G:
I
137
T
G:
P
214
S
G:
L
217
P
G:
P
221
L
G:
I
252
T
G:
K
256
N
G:
I
268
T
G:
S
275
P
G:
Y
285
H
G:
S
302
F
G:
*
311
Q
L
L:
G
146
D
L:
C
195
R
L:
K
570
R
L:
I
1224
V
L:
R
1759
K
L:
I
1773
V
L:
A
1943
V
L:
R
1967
K
L:
A
1972
V
L:
T
1987
I
L:
I
2016
V
L:
L
2017
F
L:
D
2021
N
L:
V
2077
I
L:
L
2162
F
N
N:
V
97
I
NS1
NS1:
C
3
S
NS1:
L
36
Q
NS1:
T
45
V
NS1:
I
57
V
NS1:
E
64
D
NS1:
V
65
I
NS1:
D
68
N
NS1:
I
82
V
NS1:
L
92
M
NS1:
I
93
M
NS1:
L
101
P
NS2
NS2:
I
27
M
Deletions
None
Insertions
None
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