GS_00DD80M.1

Display Name: USA/GS_00DD80M.1/2025-03-21
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV546194.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-28 03:13:57 UTC
Date released
2025-04-28 03:14:10 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN48059305
INSDC accession
PV546194.1
NCBI release date
2025-04-27
NCBI update date
2025-04-27
SRA run accession
SRR33217263

Alignment states and QC metrics

Completeness
95.32%
Length
15146
Total ambiguous nucs
1
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
10
Total SNPs
134
Total unknown nucs
627

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-03-21
Isolate name
MN-MDH-RSVB-02858

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.E.1

Nucleotide mutations

Substitutions

  • A299G
  • G341A
  • G513T
  • G579A
  • C998A
  • G1385A
  • T1451C
  • G1519A
  • C1717T
  • G1732A
  • G1801A
  • T1846C
  • G1963A
  • A2020G
  • C2074T
  • C2198T
  • C2510T
  • C2554T
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT, ins_1058:AAATAA

    Amino acid mutations

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:L20F
  • G:A74V
  • G:S100G
  • G:K103N
  • G:P110S
  • G:T113K
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:K570R
  • L:I737V
  • L:N839S
  • L:T1987I

    • N

  • N:V97I

    • P

  • P:A69V

    • SH

  • SH:S45N
  • SH:I49M
  • SH:Y61H
    • Deletions
    None
    Insertions
    None