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GS_00DD7VX.1
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Display Name: USA/GS_00DD7VX.1/2025-03-24
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV546189.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-28 03:13:57 UTC
Date released
2025-04-28 03:14:10 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN48059300
INSDC accession
PV546189.1
NCBI release date
2025-04-27
NCBI update date
2025-04-27
SRA run accession
SRR33217268
Alignment states and QC metrics
Completeness
97.51%
Length
15139
Total ambiguous nucs
2
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
4
Total SNPs
152
Total unknown nucs
293
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-03-24
Isolate name
MN-MDH-RSVB-02853
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
B.D.4.1.1
Nucleotide mutations
Substitutions
A
131
G
A
317
G
T
398
C
G
513
T
G
547
A
G
579
A
A
590
G
C
666
T
C
676
T
G
992
A
G
1385
A
A
1462
G
T
1489
C
T
1555
C
G
1732
A
T
1846
C
T
1882
C
C
2074
T
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Deletions
973, 4586, 15156
Insertions
ins_15092:ATAT
Amino acid mutations
Substitutions
F
F:
A
102
S
F:
E
110
G
F:
I
129
V
F:
S
190
N
F:
R
209
Q
F:
S
211
N
G
G:
T
73
N
G:
A
74
V
G:
R
98
K
G:
S
100
G
G:
P
214
S
G:
P
221
L
G:
H
257
Y
G:
E
259
K
L
L:
K
260
R
L:
I
445
V
L:
K
570
R
L:
T
973
A
L:
K
1704
N
L:
R
1759
K
L:
I
1834
V
L:
C
1935
S
L:
T
1987
I
M
M:
N
87
H
M:
T
89
I
N
N:
V
97
I
NS2
NS2:
T
3
A
NS2:
T
28
I
P
P:
D
229
G
Deletions
None
Insertions
None
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