GS_00DD7MD.1

Display Name: USA/GS_00DD7MD.1/2025-03-24
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV546181.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-28 03:13:57 UTC
Date released
2025-04-28 03:14:10 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN48059292
INSDC accession
PV546181.1
NCBI release date
2025-04-27
NCBI update date
2025-04-27
SRA run accession
SRR33217278

Alignment states and QC metrics

Completeness
98.11%
Length
15140
Total ambiguous nucs
5
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
3
Total SNPs
126
Total unknown nucs
198

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-03-24
Isolate name
MN-MDH-RSVB-02845

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.4.1.1

Nucleotide mutations

Substitutions

  • G86A
  • C116T
  • G579A
  • T660C
  • C706T
  • A748G
  • A827T
  • G1385A
  • T1846C
  • T1990A
  • C2134A
  • A2197G
  • C2198T
  • C2382T
  • T2457C
  • T2517C
  • T2529C
  • T2589C
    • Deletions
    4586
    Insertions
    ins_3204:GAA

    Amino acid mutations

    Substitutions

    F

  • F:R209L

    • G

  • G:S95L
  • G:P109S
  • G:S115L
  • G:P120S
  • G:T122I
  • G:T126A
  • G:T238I
  • G:D251Y
  • G:D261V
  • G:Q266K
  • G:P289S

    • L

  • L:S610P
  • L:V1592A
  • L:P1720S
  • L:M1749I

    • N

  • N:V97I

    • NS2

  • NS2:I26T
  • NS2:T82S
    • Deletions
    None
    Insertions
    None