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GS_00DD7DW.1
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Display Name: USA/GS_00DD7DW.1/2025-03-22
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV546173.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-28 03:13:57 UTC
Date released
2025-04-28 03:14:10 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN48059284
INSDC accession
PV546173.1
NCBI release date
2025-04-27
NCBI update date
2025-04-27
SRA run accession
SRR33217127
Alignment states and QC metrics
Completeness
96.91%
Length
15139
Total ambiguous nucs
1
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
4
Total SNPs
167
Total unknown nucs
386
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-03-22
Isolate name
MN-MDH-RSVB-02837
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
B.D.E.1
Nucleotide mutations
Substitutions
T
498
C
G
513
T
G
579
A
C
739
T
C
993
T
C
998
A
C
1008
T
G
1385
A
A
1606
G
G
1732
A
T
1846
C
C
2074
T
C
2198
T
T
2257
A
C
2365
T
T
2406
C
C
2554
T
C
2691
T
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Deletions
973, 3201, 4586
Insertions
ins_15092:ATAT
Amino acid mutations
Substitutions
F
F:
S
190
N
F:
S
211
N
F:
S
389
P
G
G:
N
4
K
G:
A
57
T
G:
A
74
V
G:
T
78
A
G:
S
100
G
G:
T
131
A
G:
I
137
T
G:
P
214
S
G:
L
217
P
G:
T
220
P
G:
P
221
L
G:
K
222
E
G:
I
227
T
G:
I
252
T
G:
T
253
A
G:
K
256
G
G:
T
258
A
G:
R
260
G
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L
L:
V
179
A
L:
K
570
R
L:
L
1031
I
L:
M
1225
I
L:
R
1759
K
L:
S
1946
N
L:
T
1987
I
N
N:
V
97
I
N:
D
387
E
Deletions
None
Insertions
None
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