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Influenza B/Victoria
Influenza A/H1N1pdm
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RSV-A
RSV B
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GS_00DCRY9.1
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Display Name: USA/GS_00DCRY9.1/2025-03-02
Steel,
J.; Kirby,
M.; Garten,
R.; Davis,
T.; Dugan,
V.
Submission details
Submission ID
PV555812.1.seg1/PV555811.1.seg2/PV555813.1.seg4/PV555814.1.seg5/PV555815.1.seg7/PV555816.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-23 17:06:54 UTC
Date released
2025-04-23 17:07:32 UTC
Authors
Author affiliations
Centers for Disease Control and Prevention, Influenza Division
INSDC
Bioproject accession
PRJNA998888
INSDC accession seg1
PV555812.1
INSDC accession seg2
PV555811.1
INSDC accession seg4
PV555813.1
INSDC accession seg5
PV555814.1
INSDC accession seg7
PV555815.1
INSDC accession seg8
PV555816.1
NCBI release date
2025-04-23
Clade
Clade HA
V1A.3a.2
Alignment states and QC metrics seg4
Completeness seg4
98.46%
Length seg4
1847
Total ambiguous nucs seg4
0
Total deleted nucs seg4
9
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
57
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
100.00%
Length seg5
1815
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
65
Total SNPs seg5
35
Total unknown nucs seg5
0
Alignment states and QC metrics seg7
Completeness seg7
100.00%
Length seg7
1154
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
7
Total SNPs seg7
15
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
99.62%
Length seg8
1066
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
4
Total SNPs seg8
19
Total unknown nucs seg8
0
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-03-02
Isolate name
EPI_ISL_19805215
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Alignment states and QC metrics seg1
Length seg1
2340
Alignment states and QC metrics seg2
Length seg2
2367
INSDC seg4
Lineage seg4
vic
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg4
seg4:
G
39
A
seg4:
C
188
T
seg4:
C
250
T
seg4:
C
252
A
seg4:
C
270
T
seg4:
C
276
A
seg4:
G
297
A
seg4:
G
312
T
seg4:
A
318
G
seg4:
A
351
G
seg4:
C
375
T
seg4:
C
378
T
seg4:
A
427
G
seg4:
A
435
G
seg4:
C
441
T
seg4:
T
444
C
seg4:
T
456
C
seg4:
G
457
A
Show more
seg5
seg5:
C
3
T
seg5:
T
46
C
seg5:
A
55
G
seg5:
A
121
G
seg5:
C
178
T
seg5:
A
224
G
seg5:
A
235
G
seg5:
G
244
A
seg5:
T
298
C
seg5:
C
313
T
seg5:
G
361
A
seg5:
A
373
G
seg5:
C
380
T
seg5:
A
454
G
seg5:
C
523
T
seg5:
C
608
T
seg5:
A
634
G
seg5:
G
715
T
Show more
seg7
seg7:
C
33
T
seg7:
C
46
T
seg7:
A
83
G
seg7:
T
113
C
seg7:
T
125
A
seg7:
G
316
A
seg7:
A
419
G
seg7:
G
482
A
seg7:
G
500
T
seg7:
G
521
A
seg7:
G
536
A
seg7:
A
566
G
seg7:
C
656
T
seg7:
A
919
G
seg7:
A
967
G
seg8
seg8:
G
26
A
seg8:
A
118
G
seg8:
T
163
C
seg8:
G
190
A
seg8:
A
336
T
seg8:
T
341
C
seg8:
A
352
C
seg8:
T
355
C
seg8:
G
376
A
seg8:
T
391
C
seg8:
C
419
T
seg8:
C
604
T
seg8:
A
610
T
seg8:
C
632
T
seg8:
G
661
A
seg8:
T
775
C
seg8:
C
882
T
seg8:
A
950
G
seg8:
T
963
C
Deletions
seg4:562-570
Insertions
ins_seg8:1066:TAAA, ins_seg7:0:TCTTA, ins_seg7:1147:AA, ins_seg5:0:ATTTTCTTGTGAACTCCA, ins_seg5:1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAAT
Amino acid mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
T
37
I
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
K
203
R
HA1:
R
279
K
M1
M1:
T
15
I
M1:
R
105
K
NEP
NEP:
L
30
S
NEP:
S
93
P
NP
NP:
I
9
M
NP:
T
66
A
NP:
V
453
A
NS1
NS1:
E
102
V
NS1:
Y
104
H
NS1:
K
107
N
NS1:
L
130
F
NS1:
H
201
Y
Deletions
HA1:162-164
Insertions
None
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