GenSpectrum
Influenza B/Victoria
Influenza B/Victoria
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
Browse
Loculus
Browse
Docs
API docs
GS_00DCRXB.1
Download
Download FASTA
Download metadata TSV
Display Name: USA/GS_00DCRXB.1/2025-02-27
Steel,
J.; Kirby,
M.; Garten,
R.; Davis,
T.; Dugan,
V.
Submission details
Submission ID
PV555808.1.seg4/PV555809.1.seg5/PV555810.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-23 17:06:54 UTC
Date released
2025-04-23 17:07:32 UTC
Authors
Author affiliations
Centers for Disease Control and Prevention, Influenza Division
INSDC
Bioproject accession
PRJNA998888
INSDC accession seg4
PV555808.1
INSDC accession seg5
PV555809.1
INSDC accession seg8
PV555810.1
NCBI release date
2025-04-23
Clade
Clade HA
V1A.3a.2
Alignment states and QC metrics seg4
Completeness seg4
98.46%
Length seg4
1847
Total ambiguous nucs seg4
0
Total deleted nucs seg4
9
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
54
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
100.00%
Length seg5
1815
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
65
Total SNPs seg5
32
Total unknown nucs seg5
0
Alignment states and QC metrics seg8
Completeness seg8
99.62%
Length seg8
1066
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
4
Total SNPs seg8
20
Total unknown nucs seg8
0
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-27
Isolate name
EPI_ISL_19805214
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC seg4
Lineage seg4
vic
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg4
seg4:
C
252
A
seg4:
C
270
T
seg4:
G
297
A
seg4:
G
312
T
seg4:
A
318
G
seg4:
A
351
G
seg4:
C
375
T
seg4:
C
378
T
seg4:
C
411
T
seg4:
A
427
G
seg4:
A
435
G
seg4:
C
441
T
seg4:
T
444
C
seg4:
T
456
C
seg4:
G
457
A
seg4:
A
484
G
seg4:
C
509
T
seg4:
T
510
C
Show more
seg5
seg5:
C
3
T
seg5:
T
46
C
seg5:
A
55
G
seg5:
C
178
T
seg5:
G
212
A
seg5:
A
224
G
seg5:
A
235
G
seg5:
G
244
A
seg5:
T
298
C
seg5:
C
313
T
seg5:
G
361
A
seg5:
A
373
G
seg5:
C
380
T
seg5:
A
454
G
seg5:
C
523
T
seg5:
A
577
G
seg5:
C
608
T
seg5:
A
634
G
Show more
seg8
seg8:
G
26
A
seg8:
A
118
G
seg8:
A
139
G
seg8:
T
163
C
seg8:
G
190
A
seg8:
G
313
A
seg8:
T
341
C
seg8:
A
352
C
seg8:
T
355
C
seg8:
T
371
A
seg8:
T
391
C
seg8:
C
419
T
seg8:
C
604
T
seg8:
A
610
T
seg8:
C
632
T
seg8:
G
661
A
seg8:
T
775
C
seg8:
C
882
T
seg8:
A
950
G
seg8:
T
963
C
Deletions
seg4:562-570
Insertions
ins_seg8:1066:TAAA, ins_seg5:0:ATTTTCTTGTGAACTCCA, ins_seg5:1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAAT
Amino acid mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
I
117
V
HA1:
A
127
T
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
A
199
N
HA1:
K
203
R
HA1:
R
279
K
HA2
HA2:
T
201
I
NEP
NEP:
L
30
S
NEP:
S
93
P
NP
NP:
I
9
M
NP:
V
62
I
NP:
T
66
A
NP:
V
453
A
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
C
114
S
NS1:
L
130
F
NS1:
H
201
Y
Deletions
HA1:162-164
Insertions
None
Load sequences