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Influenza B/Victoria
Influenza B/Victoria
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
RSV-A
RSV B
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GS_00DCRVF.1
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Display Name: USA/GS_00DCRVF.1/2025-02-24
Steel,
J.; Kirby,
M.; Garten,
R.; Davis,
T.; Dugan,
V.
Submission details
Submission ID
PV555796.1.seg1/PV555795.1.seg2/PV555797.1.seg3/PV555798.1.seg4/PV555799.1.seg7/PV555800.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-23 17:06:54 UTC
Date released
2025-04-23 17:07:32 UTC
Authors
Author affiliations
Centers for Disease Control and Prevention, Influenza Division
INSDC
Bioproject accession
PRJNA998888
INSDC accession seg1
PV555796.1
INSDC accession seg2
PV555795.1
INSDC accession seg3
PV555797.1
INSDC accession seg4
PV555798.1
INSDC accession seg7
PV555799.1
INSDC accession seg8
PV555800.1
NCBI release date
2025-04-23
Clade
Clade HA
V1A.3a.2
Alignment states and QC metrics seg3
Completeness seg3
100.00%
Length seg3
2275
Total ambiguous nucs seg3
0
Total deleted nucs seg3
0
Total frame shifts seg3
0
Total inserted nucs seg3
30
Total SNPs seg3
43
Total unknown nucs seg3
0
Alignment states and QC metrics seg4
Completeness seg4
98.46%
Length seg4
1847
Total ambiguous nucs seg4
0
Total deleted nucs seg4
9
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
55
Total unknown nucs seg4
0
Alignment states and QC metrics seg7
Completeness seg7
100.00%
Length seg7
1154
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
7
Total SNPs seg7
19
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
99.62%
Length seg8
1066
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
4
Total SNPs seg8
20
Total unknown nucs seg8
0
Sample details
Collection country
USA
Collection subdivision level 1
Texas
Collection date
2025-02-24
Isolate name
EPI_ISL_19805208
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Alignment states and QC metrics seg1
Length seg1
2340
Alignment states and QC metrics seg2
Length seg2
2367
INSDC seg4
Lineage seg4
vic
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg3
seg3:
T
111
C
seg3:
C
117
T
seg3:
T
339
C
seg3:
G
414
A
seg3:
T
423
C
seg3:
G
549
A
seg3:
A
618
G
seg3:
T
654
C
seg3:
A
771
G
seg3:
C
813
T
seg3:
G
867
A
seg3:
C
897
T
seg3:
A
935
G
seg3:
G
936
A
seg3:
G
961
A
seg3:
C
1006
T
seg3:
A
1054
G
seg3:
G
1056
A
Show more
seg4
seg4:
C
252
A
seg4:
G
267
A
seg4:
C
270
T
seg4:
G
297
A
seg4:
G
312
T
seg4:
A
318
G
seg4:
T
348
C
seg4:
A
351
G
seg4:
C
375
T
seg4:
C
378
T
seg4:
A
427
G
seg4:
C
441
T
seg4:
T
444
C
seg4:
A
455
G
seg4:
G
457
A
seg4:
G
460
A
seg4:
A
463
G
seg4:
A
484
G
Show more
seg7
seg7:
C
33
T
seg7:
C
46
T
seg7:
A
83
G
seg7:
T
125
A
seg7:
A
143
G
seg7:
G
316
A
seg7:
A
419
G
seg7:
A
452
G
seg7:
G
482
A
seg7:
G
500
T
seg7:
G
521
A
seg7:
G
536
A
seg7:
A
566
G
seg7:
C
656
T
seg7:
A
671
G
seg7:
C
802
T
seg7:
G
889
A
seg7:
A
919
G
seg7:
A
967
G
seg8
seg8:
G
26
A
seg8:
A
118
G
seg8:
T
163
C
seg8:
G
190
A
seg8:
T
341
C
seg8:
A
352
C
seg8:
C
375
T
seg8:
T
391
C
seg8:
C
419
T
seg8:
G
478
A
seg8:
C
604
T
seg8:
A
610
T
seg8:
C
632
T
seg8:
G
661
A
seg8:
C
666
T
seg8:
T
775
C
seg8:
G
818
A
seg8:
C
882
T
seg8:
A
950
G
seg8:
T
963
C
Deletions
seg4:562-570
Insertions
ins_seg8:1066:TAAA, ins_seg7:0:TCTTA, ins_seg7:1147:AA, ins_seg3:2241:AGAAAC, ins_seg3:2245:ATCAAAAAT, ins_seg3:0:GTTTGATTTATCATA
Amino acid mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
I
117
V
HA1:
N
126
S
HA1:
A
127
T
HA1:
E
128
K
HA1:
N
129
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
E
183
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
A
199
T
HA1:
A
202
V
HA1:
K
203
R
HA1:
R
279
K
HA2
HA2:
R
151
K
M1
M1:
T
15
I
M1:
R
105
K
NEP
NEP:
L
30
S
NEP:
S
93
P
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
T
115
M
NS1:
L
130
F
NS1:
H
201
Y
NS1:
A
212
V
NS1:
V
263
M
PA
PA:
K
312
R
PA:
D
321
N
PA:
T
352
A
PA:
S
530
T
PA:
F
709
V
PA:
N
714
S
PA:
I
723
V
Deletions
HA1:162-164
Insertions
None
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