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RSV-A
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GS_00DCQVG.1
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Display Name: USA/GS_00DCQVG.1/2025-03-05
Rothstein,
A. P.; Collins,
S.; Muir,
G.; Simas,
A.; Lu,
B.; Cosca,
B.; Girinathan,
B.; Leeson,
P.; Philipson,
C. W.; Plocik,
A. M.; Simen,
B.
Submission details
Submission ID
PV550511.1.seg2/PV550506.1.seg4/PV550509.1.seg5/PV550508.1.seg6/PV550507.1.seg7/PV550510.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-22 23:52:15 UTC
Date released
2025-04-22 23:52:45 UTC
Authors
Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity
Clade
Clade HA
6B.1A.5a.2a
Clade NA
C.5.3.1
Alignment states and QC metrics seg2
Completeness seg2
100.00%
Length seg2
2278
Total ambiguous nucs seg2
0
Total deleted nucs seg2
0
Total frame shifts seg2
0
Total inserted nucs seg2
4
Total SNPs seg2
69
Total unknown nucs seg2
0
Alignment states and QC metrics seg4
Completeness seg4
99.26%
Length seg4
1739
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
100
Total unknown nucs seg4
0
Alignment states and QC metrics seg5
Completeness seg5
100.00%
Length seg5
1530
Total ambiguous nucs seg5
0
Total deleted nucs seg5
0
Total frame shifts seg5
0
Total inserted nucs seg5
33
Total SNPs seg5
59
Total unknown nucs seg5
0
Alignment states and QC metrics seg6
Completeness seg6
99.65%
Length seg6
1428
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
23
Total unknown nucs seg6
0
Alignment states and QC metrics seg7
Completeness seg7
100.00%
Length seg7
1002
Total ambiguous nucs seg7
0
Total deleted nucs seg7
0
Total frame shifts seg7
0
Total inserted nucs seg7
20
Total SNPs seg7
26
Total unknown nucs seg7
0
Alignment states and QC metrics seg8
Completeness seg8
98.84%
Length seg8
868
Total ambiguous nucs seg8
0
Total deleted nucs seg8
0
Total frame shifts seg8
0
Total inserted nucs seg8
15
Total SNPs seg8
36
Total unknown nucs seg8
0
Sample details
Collection country
USA
Collection subdivision level 1
Washington
Collection date
2025-03-05
Isolate name
GKISBBBC79543
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession seg2
PV550511.1
INSDC accession seg4
PV550506.1
INSDC accession seg5
PV550509.1
INSDC accession seg6
PV550508.1
INSDC accession seg7
PV550507.1
INSDC accession seg8
PV550510.1
NCBI release date
2025-04-22
INSDC seg4
Subtype seg4
H1
INSDC seg6
Subtype seg6
N1
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg2
seg2:
G
42
A
seg2:
T
69
C
seg2:
A
159
G
seg2:
G
168
A
seg2:
G
180
A
seg2:
C
192
T
seg2:
T
207
A
seg2:
T
210
C
seg2:
T
222
C
seg2:
G
225
A
seg2:
C
272
A
seg2:
C
297
T
seg2:
G
312
A
seg2:
A
345
G
seg2:
A
366
G
seg2:
T
384
C
seg2:
C
447
T
seg2:
T
450
C
Show more
seg4
seg4:
C
42
A
seg4:
A
47
G
seg4:
G
57
A
seg4:
C
64
T
seg4:
A
119
G
seg4:
T
161
C
seg4:
C
164
T
seg4:
G
188
A
seg4:
A
231
C
seg4:
C
293
A
seg4:
G
311
A
seg4:
T
320
C
seg4:
G
322
A
seg4:
G
338
T
seg4:
G
360
A
seg4:
G
416
A
seg4:
A
429
G
seg4:
C
443
T
Show more
seg5
seg5:
A
33
G
seg5:
G
42
T
seg5:
C
87
T
seg5:
A
97
G
seg5:
C
141
A
seg5:
C
171
T
seg5:
T
177
C
seg5:
C
180
T
seg5:
C
249
A
seg5:
A
288
C
seg5:
G
298
A
seg5:
G
309
A
seg5:
T
314
C
seg5:
G
315
A
seg5:
R
341
A
seg5:
T
365
A
seg5:
A
390
G
seg5:
T
402
C
Show more
seg6
seg6:
A
144
G
seg6:
G
163
A
seg6:
T
173
C
seg6:
G
192
A
seg6:
C
452
A
seg6:
C
571
T
seg6:
G
607
A
seg6:
T
676
C
seg6:
C
776
T
seg6:
A
785
G
seg6:
T
799
C
seg6:
A
818
G
seg6:
C
893
T
seg6:
G
914
T
seg6:
C
1007
T
seg6:
T
1016
C
seg6:
A
1049
G
seg6:
C
1187
T
Show more
seg7
seg7:
G
75
A
seg7:
C
124
A
seg7:
G
238
A
seg7:
G
258
A
seg7:
G
270
A
seg7:
A
293
G
seg7:
G
306
A
seg7:
G
339
A
seg7:
G
342
A
seg7:
C
375
A
seg7:
T
432
C
seg7:
G
441
T
seg7:
G
492
A
seg7:
C
507
A
seg7:
A
574
G
seg7:
C
622
A
seg7:
G
660
A
seg7:
T
663
C
Show more
seg8
seg8:
C
6
A
seg8:
C
42
T
seg8:
C
54
T
seg8:
C
57
T
seg8:
T
99
C
seg8:
C
108
A
seg8:
T
159
C
seg8:
G
163
A
seg8:
C
192
T
seg8:
C
204
T
seg8:
A
238
G
seg8:
G
250
A
seg8:
C
264
T
seg8:
C
268
A
seg8:
C
315
T
seg8:
G
363
A
seg8:
A
367
G
seg8:
A
375
T
Show more
Deletions
None
Insertions
ins_seg8:0:GGTGACAAAAACATA, ins_seg7:982:AAAACTA, ins_seg7:0:TAGATGTTTAAAG, ins_seg5:0:GTAGATAATCACTCAATGAGTGACATCGAAGCC, ins_seg2:2274:TGAA
Amino acid mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
S
84
N
HA1:
D
97
N
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
I
166
V
HA1:
K
169
Q
HA1:
S
183
P
HA1:
S
185
I
HA1:
A
186
T
HA1:
Q
189
E
Show more
HA2
HA2:
L
38
M
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
N
HA2:
E
172
K
HA2:
E
179
D
HA2:
I
183
T
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
D
21
G
M2:
S
23
N
NA
NA:
I
46
V
NA:
S
52
N
NA:
V
62
I
NA:
T
188
I
NA:
S
200
N
NA:
I
223
T
NA:
I
264
T
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
N
29
S
NEP:
T
33
I
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
PB1
PB1:
A
91
D
PB1:
G
154
D
PB1:
V
200
I
PB1:
I
342
V
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
K
757
R
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
SigPep:
A
15
V
Deletions
None
Insertions
None
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