GS_00DCQRQ.1

Display Name: USA/GS_00DCQRQ.1/2025-04-10
Rothstein, A. P.; Collins, S.; Muir, G.; Simas, A.; Lu, B.; Cosca, B.; Girinathan, B.; Leeson, P.; Philipson, C. W.; Plocik, A. M.; Simen, B.

Submission details

Submission ID
PV543899.1.seg1/PV543900.1.seg2/PV543895.1.seg4/PV543898.1.seg5/PV543897.1.seg6/PV543896.1.seg7
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-18 21:22:57 UTC
Date released
2025-04-18 21:23:08 UTC

Authors

Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity

Sample details

Collection country
USA
Collection subdivision level 1
New York
Collection date
2025-04-10
Isolate name
GKISBBBE82371

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg1
PV543899.1
INSDC accession seg2
PV543900.1
INSDC accession seg4
PV543895.1
INSDC accession seg5
PV543898.1
INSDC accession seg6
PV543897.1
INSDC accession seg7
PV543896.1
NCBI release date
2025-04-18

Alignment states and QC metrics seg1

Length seg1
2340

Alignment states and QC metrics seg2

Length seg2
2367

Alignment states and QC metrics seg4

Length seg4
1847

Alignment states and QC metrics seg5

Length seg5
1815

Alignment states and QC metrics seg6

Length seg6
1529

Alignment states and QC metrics seg7

Length seg7
1155

INSDC seg4

Lineage seg4
vic

Clade

Lineage
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None