GS_00DCQPU.1

Display Name: USA/GS_00DCQPU.1/2025-03-10
Rothstein, A. P.; Collins, S.; Muir, G.; Simas, A.; Lu, B.; Cosca, B.; Girinathan, B.; Leeson, P.; Philipson, C. W.; Plocik, A. M.; Simen, B.

Submission details

Submission ID
PV543888.1.seg1/PV543889.1.seg2/PV543884.1.seg4/PV543887.1.seg5/PV543886.1.seg6/PV543885.1.seg7
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-18 21:22:57 UTC
Date released
2025-04-18 21:23:08 UTC

Authors

Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity

Sample details

Collection country
USA
Collection subdivision level 1
New York
Collection date
2025-03-10
Isolate name
GKISBBBE48588

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg1
PV543888.1
INSDC accession seg2
PV543889.1
INSDC accession seg4
PV543884.1
INSDC accession seg5
PV543887.1
INSDC accession seg6
PV543886.1
INSDC accession seg7
PV543885.1
NCBI release date
2025-04-18

Alignment states and QC metrics seg1

Length seg1
2355

Alignment states and QC metrics seg2

Length seg2
2384

Alignment states and QC metrics seg4

Length seg4
1861

Alignment states and QC metrics seg5

Length seg5
1829

Alignment states and QC metrics seg6

Length seg6
1542

Alignment states and QC metrics seg7

Length seg7
1175

INSDC seg4

Lineage seg4
vic

Clade

Lineage
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None