GS_00DCQMY.1

Display Name: USA/GS_00DCQMY.1/2025-03-30
Rothstein, A. P.; Collins, S.; Muir, G.; Simas, A.; Lu, B.; Cosca, B.; Girinathan, B.; Leeson, P.; Philipson, C. W.; Plocik, A. M.; Simen, B.

Submission details

Submission ID
PV543878.1.seg1/PV543877.1.seg3/PV543872.1.seg4/PV543875.1.seg5/PV543874.1.seg6/PV543873.1.seg7/PV543876.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-18 21:22:57 UTC
Date released
2025-04-18 21:23:08 UTC

Authors

Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2025-03-30
Isolate name
GKISBBBE43030

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg1
PV543878.1
INSDC accession seg3
PV543877.1
INSDC accession seg4
PV543872.1
INSDC accession seg5
PV543875.1
INSDC accession seg6
PV543874.1
INSDC accession seg7
PV543873.1
INSDC accession seg8
PV543876.1
NCBI release date
2025-04-18

Alignment states and QC metrics seg1

Length seg1
2344

Alignment states and QC metrics seg3

Length seg3
2287

Alignment states and QC metrics seg4

Length seg4
1844

Alignment states and QC metrics seg5

Length seg5
1832

Alignment states and QC metrics seg6

Length seg6
1529

Alignment states and QC metrics seg7

Length seg7
1114

Alignment states and QC metrics seg8

Length seg8
1074

INSDC seg4

Lineage seg4
vic

Clade

Lineage
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None