GS_00DCQK2.1

Display Name: USA/GS_00DCQK2.1/2025-03-06
Rothstein, A. P.; Collins, S.; Muir, G.; Simas, A.; Lu, B.; Cosca, B.; Girinathan, B.; Leeson, P.; Philipson, C. W.; Plocik, A. M.; Simen, B.

Submission details

Submission ID
PV543863.1.seg1/PV543864.1.seg2/PV543862.1.seg3/PV543858.1.seg4/PV543860.1.seg5/PV543859.1.seg7/PV543861.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-18 21:22:57 UTC
Date released
2025-04-18 21:23:08 UTC

Authors

Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity

Sample details

Collection country
USA
Collection subdivision level 1
New York
Collection date
2025-03-06
Isolate name
GKISBBBE37560

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg1
PV543863.1
INSDC accession seg2
PV543864.1
INSDC accession seg3
PV543862.1
INSDC accession seg4
PV543858.1
INSDC accession seg5
PV543860.1
INSDC accession seg7
PV543859.1
INSDC accession seg8
PV543861.1
NCBI release date
2025-04-18

Alignment states and QC metrics seg1

Length seg1
2355

Alignment states and QC metrics seg2

Length seg2
2382

Alignment states and QC metrics seg3

Length seg3
2291

Alignment states and QC metrics seg4

Length seg4
1841

Alignment states and QC metrics seg5

Length seg5
1828

Alignment states and QC metrics seg7

Length seg7
1155

Alignment states and QC metrics seg8

Length seg8
1083

INSDC seg4

Lineage seg4
vic

Clade

Lineage
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None