GS_00DCQH6.1

Display Name: USA/GS_00DCQH6.1/2025-03-23
Rothstein, A. P.; Collins, S.; Muir, G.; Simas, A.; Lu, B.; Cosca, B.; Girinathan, B.; Leeson, P.; Philipson, C. W.; Plocik, A. M.; Simen, B.

Submission details

Submission ID
PV543851.1.seg1/PV543852.1.seg2/PV543847.1.seg4/PV543849.1.seg5/PV543848.1.seg6/PV543850.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-04-18 21:22:57 UTC
Date released
2025-04-18 21:23:08 UTC

Authors

Author affiliations
Ginkgo Bioworks, Ginkgo Biosecurity

Sample details

Collection country
USA
Collection subdivision level 1
Virginia
Collection date
2025-03-23
Isolate name
GKISBBBE03805

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession seg1
PV543851.1
INSDC accession seg2
PV543852.1
INSDC accession seg4
PV543847.1
INSDC accession seg5
PV543849.1
INSDC accession seg6
PV543848.1
INSDC accession seg8
PV543850.1
NCBI release date
2025-04-18

Alignment states and QC metrics seg1

Length seg1
2356

Alignment states and QC metrics seg2

Length seg2
2381

Alignment states and QC metrics seg4

Length seg4
1847

Alignment states and QC metrics seg5

Length seg5
1817

Alignment states and QC metrics seg6

Length seg6
1528

Alignment states and QC metrics seg8

Length seg8
1083

INSDC seg4

Lineage seg4
vic

Clade

Lineage
vic

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None

Amino acid mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions
Deletions
None
Insertions
None