GS_00D9UL2.1

Display Name: USA/GS_00D9UL2.1/2025-02-24
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV277729.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-24 02:51:00 UTC
Date released
2025-03-24 02:51:13 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47342825
INSDC accession
PV277729.1
NCBI release date
2025-03-23
NCBI update date
2025-03-23
SRA run accession
SRR32687909

Alignment states and QC metrics

Completeness
96.99%
Length
15046
Total ambiguous nucs
120
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
134
Total unknown nucs
160

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-24
Isolate name
MN-MDH-RSVA-02312

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • G587T
  • G747A
  • G755A
  • G1000A
  • C1012T
  • T1035A
  • G1050A
  • T1359C
  • C1788T
  • C1806T
  • T2165C
  • G2298A
  • T2313G
  • A2392G
  • T2434C
  • T2481C
    • Deletions
    4175
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    G

  • G:P71L
  • G:H90Y
  • G:I134K
  • G:G224E
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:H1690Y
  • L:N1723S
  • L:N1724D
  • L:E1725G
  • L:G1731D

    • N

  • N:V352A

    • NS2

  • NS2:R50K
  • NS2:D53N

    • P

  • P:L55P

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None