GS_00D9UH8.1

Display Name: USA/GS_00D9UH8.1/2025-02-21
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV277726.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-24 02:51:00 UTC
Date released
2025-03-24 02:51:13 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47342822
INSDC accession
PV277726.1
NCBI release date
2025-03-23
NCBI update date
2025-03-23
SRA run accession
SRR32687912

Alignment states and QC metrics

Completeness
97.92%
Length
15046
Total ambiguous nucs
25
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
213
Total unknown nucs
113

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-21
Isolate name
MN-MDH-RSVA-02309

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.5

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • G664A
  • C1012T
  • G1050A
  • T1218C
  • T1242C
  • T1320C
  • T1359C
  • T1569A
  • A1605G
  • T1668C
  • C1788T
  • C1806T
  • T1851C
  • C1885A
  • G1968A
  • G1971A
    • Deletions
    4592
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:T122A

    • G

  • G:P71L
  • G:T89I
  • G:H90Y
  • G:L101F
  • G:T112A
  • G:T118I
  • G:S121G
  • G:I134K
  • G:L142S
  • G:P206Q
  • G:P222L
  • G:G224E
  • G:S243I
  • G:L248I
  • G:K253Q
  • G:G254R
  • G:K262E
  • G:I265L

    • L

  • L:P171L
  • L:T179A
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:K1726R
  • L:G1731D
  • L:S1789F

    • N

  • N:V352A

    • P

  • P:L55P

    • SH

  • SH:I38S
  • SH:C45Y
    • Deletions
    None
    Insertions
    None