GS_00D9UCK.1

Display Name: USA/GS_00D9UCK.1/2025-02-20
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV277721.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-24 02:51:00 UTC
Date released
2025-03-24 02:51:13 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47342817
INSDC accession
PV277721.1
NCBI release date
2025-03-23
NCBI update date
2025-03-23
SRA run accession
SRR32687917

Alignment states and QC metrics

Completeness
91.02%
Length
15043
Total ambiguous nucs
4
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
0
Total SNPs
209
Total unknown nucs
1185

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-20
Isolate name
MN-MDH-RSVA-02304

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.5.1

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • A327T
  • C624T
  • T697C
  • T826C
  • T868C
  • T905C
  • A940C
  • T977C
  • A1009G
  • C1012T
  • A1021G
  • T1028C
  • C1047T
  • G1050A
  • A1051C
  • T1359C
    • Deletions
    4593, 7516-7518
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:T122A
  • F:F477L

    • G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T118I
  • G:I134K
  • G:T136I
  • G:P206Q
  • G:K209R
  • G:T220I
  • G:G224E
  • G:S243I
  • G:L248I
  • G:K262E
  • G:I265L
  • G:S277P
  • G:Y280H
  • G:D284G

    • L

  • L:S141P
  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:T1718I
  • L:N1723G
  • L:G1731D
  • L:V1943D

    • M

  • M:M73L

    • N

  • N:Y216H
  • N:V352A

    • NS2

  • NS2:T9I

    • P

  • P:L55P

    • SH

  • SH:C45Y
    • Deletions
    None
    Insertions
    None