GS_00D9UAP.1

Display Name: USA/GS_00D9UAP.1/2025-02-20
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV277719.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-24 02:51:00 UTC
Date released
2025-03-24 02:51:13 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47342815
INSDC accession
PV277719.1
NCBI release date
2025-03-23
NCBI update date
2025-03-23
SRA run accession
SRR32687920

Alignment states and QC metrics

Completeness
91.28%
Length
15050
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
3
Total SNPs
192
Total unknown nucs
1149

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-20
Isolate name
MN-MDH-RSVA-02302

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.3

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • T106C
  • C183T
  • A357G
  • A517T
  • A563G
  • G587T
  • A610G
  • G1034A
  • G1050A
  • G1077A
  • T1359C
  • T1413A
  • T1422C
  • T1668C
  • A1730C
  • C1788T
  • C1806T
    • Deletions
    None
    Insertions
    ins_3154:A, ins_5630:AA

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:T12I
  • F:S276N
  • F:Y286F

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:V131D
  • G:K132E
  • G:I134K
  • G:N178G
  • G:K213R
  • G:G224E
  • G:P230T
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:G272S
  • G:P274L

    • L

  • L:P171L
  • L:A173S
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:E1190D
  • L:L1438Q
  • L:V1721I
  • L:N1723S
  • L:N1724D
  • L:E1725G
  • L:S1730N
  • L:G1731D
  • L:S1964L
  • L:V2129I

    • N

  • N:N207T
  • N:V352A

    • P

  • P:T92M

    • SH

  • SH:F55L
    • Deletions
    None
    Insertions
    None