GS_00D9U9R.1

Display Name: USA/GS_00D9U9R.1/2025-02-22
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV277718.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-24 02:51:00 UTC
Date released
2025-03-24 02:51:13 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47342814
INSDC accession
PV277718.1
NCBI release date
2025-03-23
NCBI update date
2025-03-23
SRA run accession
SRR32687921

Alignment states and QC metrics

Completeness
97.35%
Length
15045
Total ambiguous nucs
64
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
1
Total SNPs
157
Total unknown nucs
161

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-22
Isolate name
MN-MDH-RSVA-02301

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.3

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • A582G
  • G587T
  • C691T
  • G747A
  • G755A
  • G1000A
  • C1012T
  • T1035A
  • G1050A
  • T1359C
  • T1413A
  • T1422C
  • C1788T
  • C1806T
  • T2064C
  • T2165C
    • Deletions
    3214, 4175, 4592
    Insertions
    ins_15110:N

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    G

  • G:P71L
  • G:H90Y
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:G224E
  • G:P230T
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:D284G

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:I1523V
  • L:I1653V
  • L:K1661N
  • L:H1690Y
  • L:T1712S
  • L:N1719Y
  • L:N1723S
  • L:N1724D
  • L:E1725G
  • L:G1731D

    • N

  • N:V352A

    • NS2

  • NS2:R50K
  • NS2:D53N

    • P

  • P:L55P

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None