GS_00D9U8T.1

Display Name: USA/GS_00D9U8T.1/2025-02-18
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV277717.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-24 02:51:00 UTC
Date released
2025-03-24 02:51:13 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47342813
INSDC accession
PV277717.1
NCBI release date
2025-03-23
NCBI update date
2025-03-23
SRA run accession
SRR32687922

Alignment states and QC metrics

Completeness
96.26%
Length
15044
Total ambiguous nucs
1
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
0
Total SNPs
227
Total unknown nucs
390

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-18
Isolate name
MN-MDH-RSVA-02300

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.1.6

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • G198A
  • A303T
  • C360T
  • A399G
  • T497C
  • G551A
  • G555A
  • G664A
  • T697C
  • G747A
  • T781C
  • T832C
  • G1000A
  • C1012T
  • T1035A
  • C1046T
    • Deletions
    4175, 4591, 4592
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:I11V

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G106E
  • G:P120L
  • G:S121I
  • G:I134K
  • G:L142S
  • G:P143S
  • G:P217S
  • G:G224E
  • G:N242T
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:G296S
  • G:S299N

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:M1225I
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:H1690Y
  • L:H1707Q
  • L:N1719Y
  • L:N1723S
  • L:N1724D
  • L:E1725G
  • L:G1731D
  • L:Y2163N

    • M

  • M:M43I

    • N

  • N:V352A

    • NS2

  • NS2:R50K

    • P

  • P:L55P

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None