GS_00D9TYD.1

Display Name: USA/GS_00D9TYD.1/2025-02-17
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV277707.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-24 02:51:00 UTC
Date released
2025-03-24 02:51:13 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47342803
INSDC accession
PV277707.1
NCBI release date
2025-03-23
NCBI update date
2025-03-23
SRA run accession
SRR32687864

Alignment states and QC metrics

Completeness
92.07%
Length
15048
Total ambiguous nucs
4
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
210
Total unknown nucs
1026

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-17
Isolate name
MN-MDH-RSVA-02290

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.3

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • C228T
  • C531A
  • A532G
  • G587T
  • G745A
  • G1034A
  • G1050A
  • G1077A
  • G1299A
  • T1359C
  • T1413A
  • T1422C
  • T1596C
  • C1788T
  • A1794T
  • C1806T
    • Deletions
    None
    Insertions
    ins_15115:T

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:T12I

    • G

  • G:P71L
  • G:H90Y
  • G:G98E
  • G:T113I
  • G:L115P
  • G:A116D
  • G:V131D
  • G:I134K
  • G:N178G
  • G:G224E
  • G:S243I
  • G:L248H
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266F
  • G:P274L
  • G:Y280H

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725R
  • L:G1731D
  • L:I1776V
  • L:T1969I

    • N

  • N:V352A

    • P

  • P:T92M

    • SH

  • SH:N63D
    • Deletions
    None
    Insertions
    None