GS_00D9SHA.1

Display Name: USA/GS_00D9SHA.1/2025-02-13
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV277749.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-24 02:47:52 UTC
Date released
2025-03-24 02:48:05 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47342843
INSDC accession
PV277749.1
NCBI release date
2025-03-23
NCBI update date
2025-03-23
SRA run accession
SRR32687889

Alignment states and QC metrics

Completeness
94.28%
Length
15137
Total ambiguous nucs
0
Total deleted nucs
3
Total frame shifts
0
Total inserted nucs
2
Total SNPs
129
Total unknown nucs
787

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-13
Isolate name
MN-MDH-RSVB-02330

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.E.1

Nucleotide mutations

Substitutions

  • C165T
  • G513T
  • G579A
  • G955A
  • C998A
  • G1029A
  • G1385A
  • G1651A
  • C1663A
  • G1732A
  • T1846C
  • G2065A
  • C2074T
  • A2089G
  • C2198T
  • C2554T
  • C2691T
  • T2997C
    • Deletions
    973, 4586, 5610
    Insertions
    ins_15092:AT

    Amino acid mutations

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H
  • G:P293L

    • L

  • L:K570R
  • L:R1189K
  • L:R1759K
  • L:S1801T
  • L:T1987I

    • N

  • N:V97I
    • Deletions
    None
    Insertions
    None