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GS_00D9SGD.1
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Display Name: USA/GS_00D9SGD.1/2025-02-13
Kunerth,
H. D.; Plumb,
M.; Namugenyi,
S.; Evans,
D.; Bohnkers-Voels,
L.; Strain,
A.
Submission details
Submission ID
PV277748.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-24 02:47:52 UTC
Date released
2025-03-24 02:48:05 UTC
Authors
Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
INSDC
Bioproject accession
PRJNA1048457
Biosample accession
SAMN47342842
INSDC accession
PV277748.1
NCBI release date
2025-03-23
NCBI update date
2025-03-23
SRA run accession
SRR32687890
Alignment states and QC metrics
Completeness
91.61%
Length
15140
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
4
Total SNPs
145
Total unknown nucs
1193
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-13
Isolate name
MN-MDH-RSVB-02329
Host
Host name scientific
Homo sapiens
Host taxon id
9606
Clade & Lineage
Lineage
B.D.E.1.2
Nucleotide mutations
Substitutions
G
513
T
G
579
A
C
583
T
G
599
A
G
1028
A
C
1038
A
T
1126
C
G
1385
A
G
1398
A
A
1414
G
G
1732
A
G
1768
A
T
1846
C
C
2074
T
C
2198
T
C
2554
T
C
2592
T
C
2691
T
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Deletions
973, 4586
Insertions
ins_15092:ATAT
Amino acid mutations
Substitutions
F
F:
F
12
I
F:
V
103
I
F:
S
190
N
F:
S
211
N
F:
S
389
P
G
G:
A
116
T
G:
T
131
A
G:
I
137
T
G:
Y
161
H
G:
P
214
S
G:
L
217
P
G:
P
221
L
G:
S
243
I
G:
D
251
N
G:
I
252
T
G:
T
254
I
G:
I
268
T
G:
A
269
V
G:
S
275
P
G:
Y
285
H
G:
E
303
K
L
L:
S
169
P
L:
K
570
R
L:
R
1759
K
L:
T
1987
I
N
N:
V
97
I
N:
R
101
H
NS2
NS2:
D
6
N
Deletions
None
Insertions
None
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