GS_00D9SDK.1

Display Name: USA/GS_00D9SDK.1/2025-02-12
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV277745.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-24 02:47:52 UTC
Date released
2025-03-24 02:48:05 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47342839
INSDC accession
PV277745.1
NCBI release date
2025-03-23
NCBI update date
2025-03-23
SRA run accession
SRR32687893

Alignment states and QC metrics

Completeness
92.02%
Length
15140
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
4
Total SNPs
124
Total unknown nucs
1130

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-12
Isolate name
MN-MDH-RSVB-02326

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.E.1.4

Nucleotide mutations

Substitutions

  • T483C
  • G513T
  • G579A
  • A827G
  • C994T
  • C1018T
  • G1385A
  • A1537T
  • G1546A
  • G1732A
  • G1768A
  • T1846C
  • C2198T
  • C2521T
  • C2554T
  • C2691T
  • A2832G
  • G3036C
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Substitutions

    F

  • F:F12I
  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:A107T
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P221L
  • G:I252T
  • G:I268T
  • G:S275P
  • G:L284I
  • G:Y285H

    • L

  • L:S169P
  • L:K570R
  • L:I1501V
  • L:R1759K
  • L:T1987I

    • N

  • N:V97I

    • NS2

  • NS2:T82A

    • P

  • P:P73S
    • Deletions
    None
    Insertions
    None