GS_00D9S7X.1

Display Name: USA/GS_00D9S7X.1/2025-02-17
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV277739.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-24 02:47:52 UTC
Date released
2025-03-24 02:48:05 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47342833
INSDC accession
PV277739.1
NCBI release date
2025-03-23
NCBI update date
2025-03-23
SRA run accession
SRR32687900

Alignment states and QC metrics

Completeness
91.33%
Length
15140
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
4
Total SNPs
129
Total unknown nucs
1236

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-17
Isolate name
MN-MDH-RSVB-02320

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.E.1

Nucleotide mutations

Substitutions

  • G513T
  • G579A
  • G646A
  • C826T
  • T935C
  • C998A
  • G1385A
  • G1732A
  • T1846C
  • A1984T
  • C1996T
  • C2074T
  • C2198T
  • C2554T
  • C2691T
  • T2784C
  • T2947C
  • G3036C
    • Deletions
    973, 4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A57V
  • G:A74V
  • G:S100G

    • L

  • L:N143S
  • L:K570R
  • L:G1735E
  • L:R1759K
  • L:T1987I

    • N

  • N:V97I

    • NS2

  • NS2:Y118H

    • P

  • P:S215P

    • SH

  • SH:D64N
    • Deletions
    None
    Insertions
    None