GS_00D84LU.1

Display Name: USA/GS_00D84LU.1/2025-02-17
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV246742.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-17 03:02:17 UTC
Date released
2025-03-17 03:02:31 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47265107
INSDC accession
PV246742.1
NCBI release date
2025-03-16
NCBI update date
2025-03-16
SRA run accession
SRR32610721

Alignment states and QC metrics

Completeness
90.01%
Length
15139
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
3
Total SNPs
133
Total unknown nucs
1436

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-17
Isolate name
MN-MDH-RSVB-02274

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.E.1

Nucleotide mutations

Substitutions

  • G513T
  • C578T
  • G579A
  • C984T
  • C998A
  • C1204T
  • G1385A
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • C2554T
  • G2585A
  • C2691T
  • G3036C
  • G3050A
  • C3051T
  • A3060G
    • Deletions
    973, 4586
    Insertions
    ins_15092:AT, ins_3112:C

    Amino acid mutations

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:T70S
  • G:A74V
  • G:S100G
  • G:H112Y
  • G:P214S
  • G:P221L
  • G:T225P
  • G:V249A
  • G:I252T
  • G:S255P
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H

    • L

  • L:N176S
  • L:S560P
  • L:K570R
  • L:V1721I
  • L:I1832V
  • L:T1987I

    • N

  • N:V97I

    • P

  • P:S94N
    • Deletions
    None
    Insertions
    None