GS_00D84BD.1

Display Name: USA/GS_00D84BD.1/2025-02-11
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV246733.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-17 03:02:17 UTC
Date released
2025-03-17 03:02:31 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47265098
INSDC accession
PV246733.1
NCBI release date
2025-03-16
NCBI update date
2025-03-16
SRA run accession
SRR32610653

Alignment states and QC metrics

Completeness
93.38%
Length
15138
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
2
Total SNPs
132
Total unknown nucs
924

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-11
Isolate name
MN-MDH-RSVB-02265

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.E.1

Nucleotide mutations

Substitutions

  • A134G
  • T365C
  • G513T
  • C515T
  • G579A
  • A581G
  • C688T
  • T838C
  • C883T
  • C890T
  • C998A
  • A1228T
  • G1385A
  • G1732A
  • T1846C
  • C2074T
  • C2198T
  • G2463A
    • Deletions
    973, 4586
    Insertions
    ins_15092:AT

    Amino acid mutations

    Substitutions

    F

  • F:R42K
  • F:T121A
  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:P214S
  • G:P221L
  • G:T225P
  • G:R240K
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H
  • G:P293L

    • L

  • L:G146D
  • L:K570R
  • L:I1932V
  • L:V1965I
  • L:I1969T
  • L:T1987I

    • N

  • N:V97I

    • P

  • P:P73S

    • SH

  • SH:D64N
    • Deletions
    None
    Insertions
    None