GS_00D849H.1

Display Name: USA/GS_00D849H.1/2025-02-16
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV246731.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-17 03:02:17 UTC
Date released
2025-03-17 03:02:31 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47265096
INSDC accession
PV246731.1
NCBI release date
2025-03-16
NCBI update date
2025-03-16
SRA run accession
SRR32610655

Alignment states and QC metrics

Completeness
93.36%
Length
15141
Total ambiguous nucs
0
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
4
Total SNPs
131
Total unknown nucs
927

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-16
Isolate name
MN-MDH-RSVB-02263

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.4.1.1

Nucleotide mutations

Substitutions

  • A131G
  • T335G
  • G513T
  • G547A
  • G579A
  • C589T
  • A590G
  • C666T
  • C739T
  • A1234G
  • G1385A
  • A1462G
  • A1513T
  • T1555C
  • G1732A
  • T1846C
  • T1882C
  • G2029A
    • Deletions
    973
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Substitutions

    F

  • F:L13I
  • F:V103A
  • F:S190N
  • F:S211N

    • G

  • G:A74V
  • G:R98K
  • G:S100G
  • G:S102F
  • G:P214S
  • G:P221L
  • G:I252T
  • G:S265P
  • G:I268T
  • G:S275P
  • G:*311Q

    • L

  • L:N143S
  • L:K260R
  • L:I445V
  • L:K570R
  • L:K1704N
  • L:I1834V
  • L:F1982L
  • L:T1987I

    • M

  • M:T89I

    • N

  • N:V97I

    • NS1

  • NS1:I93M

    • NS2

  • NS2:T3A
  • NS2:T28I

    • P

  • P:S67G
  • P:D229G
    • Deletions
    None
    Insertions
    None