GS_00D845R.1

Display Name: USA/GS_00D845R.1/2025-02-10
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV246727.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-17 03:02:17 UTC
Date released
2025-03-17 03:02:31 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47265092
INSDC accession
PV246727.1
NCBI release date
2025-03-16
NCBI update date
2025-03-16
SRA run accession
SRR32610660

Alignment states and QC metrics

Completeness
91.63%
Length
15136
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
0
Total SNPs
116
Total unknown nucs
1190

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-10
Isolate name
MN-MDH-RSVB-02259

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.4.1.1

Nucleotide mutations

Substitutions

  • G434A
  • A511G
  • G513T
  • G546A
  • G579A
  • C610T
  • T760C
  • C817T
  • C904A
  • C1005T
  • A1357G
  • G1385A
  • C1429T
  • C1577T
  • C1693T
  • T1846C
  • T1882A
  • A1891G
    • Deletions
    973, 7402
    Insertions
    None

    Amino acid mutations

    Substitutions

    F

  • F:S190N
  • F:S211N

    • G

  • G:A74V
  • G:R98G
  • G:S119P
  • G:I252T
  • G:S265P
  • G:I268T
  • G:L270P
  • G:S275P
  • G:H277Y
  • G:S283P
  • G:L284P
  • G:Y285H

    • L

  • L:K192R
  • L:I1719T
  • L:T1987I
  • L:E2165D

    • N

  • N:V97I

    • NS1

  • NS1:M126I
    • Deletions
    None
    Insertions
    None