GS_00D83UD.1

Display Name: USA/GS_00D83UD.1/2025-02-11
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV246716.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-17 03:02:17 UTC
Date released
2025-03-17 03:02:31 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47265081
INSDC accession
PV246716.1
NCBI release date
2025-03-16
NCBI update date
2025-03-16
SRA run accession
SRR32610736

Alignment states and QC metrics

Completeness
93.38%
Length
15141
Total ambiguous nucs
4
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
4
Total SNPs
130
Total unknown nucs
919

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-11
Isolate name
MN-MDH-RSVB-02248

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
B.D.E.1

Nucleotide mutations

Substitutions

  • C116T
  • A401G
  • G513T
  • C566T
  • G579A
  • C715T
  • C772T
  • T925C
  • C998A
  • C1156T
  • G1385A
  • G1732A
  • T1846C
  • G2065A
  • C2074T
  • C2198T
  • C2554T
  • C2637T
    • Deletions
    4586
    Insertions
    ins_15092:ATAT

    Amino acid mutations

    Substitutions

    F

  • F:S190N
  • F:S211N
  • F:S389P

    • G

  • G:A74V
  • G:S100G
  • G:P214S
  • G:P221L
  • G:I252T
  • G:K256N
  • G:I268T
  • G:S275P
  • G:Y285H
  • G:S305Y

    • L

  • L:K570R
  • L:T1737A
  • L:R1759K
  • L:V1965I
  • L:T1987I
  • L:V2008I
  • L:Y2060H

    • N

  • N:V97I
    • Deletions
    None
    Insertions
    None