GS_00D83AG.1

Display Name: USA/GS_00D83AG.1/2025-02-18
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV246698.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-17 02:53:49 UTC
Date released
2025-03-17 02:54:35 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47265063
INSDC accession
PV246698.1
NCBI release date
2025-03-16
NCBI update date
2025-03-16
SRA run accession
SRR32610755

Alignment states and QC metrics

Completeness
95.78%
Length
15044
Total ambiguous nucs
1
Total deleted nucs
4
Total frame shifts
0
Total inserted nucs
1
Total SNPs
227
Total unknown nucs
463

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-18
Isolate name
MN-MDH-RSVA-02230

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.1.5

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • G198A
  • A321G
  • A351G
  • G551A
  • A565T
  • C622T
  • G664A
  • T697C
  • G747A
  • A748G
  • A820G
  • A837G
  • T928C
  • G986T
  • G1000A
  • C1012T
    • Deletions
    4592, 7555, 15108, 15109
    Insertions
    ins_2299:G

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:V127I

    • G

  • G:A57T
  • G:P71L
  • G:H90Y
  • G:S100N
  • G:L101F
  • G:I134K
  • G:L142S
  • G:G224V
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:S294P
  • G:Y304H
  • G:T319I
  • G:T320A

    • L

  • L:S100L
  • L:Y125H
  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:M1225I
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • M

  • M:M43I

    • N

  • N:V352A

    • NS2

  • NS2:R50K
  • NS2:K80R

    • P

  • P:L55P
    • Deletions
    None
    Insertions
    None