GS_00D82VC.1

Display Name: USA/GS_00D82VC.1/2025-02-17
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV246683.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-17 02:53:49 UTC
Date released
2025-03-17 02:54:35 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47265048
INSDC accession
PV246683.1
NCBI release date
2025-03-16
NCBI update date
2025-03-16
SRA run accession
SRR32610676

Alignment states and QC metrics

Completeness
93.84%
Length
15047
Total ambiguous nucs
3
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
2
Total SNPs
236
Total unknown nucs
757

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-17
Isolate name
MN-MDH-RSVA-02215

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.1.8

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • T195G
  • G198A
  • T249A
  • A271C
  • T387C
  • A506C
  • G520A
  • C528T
  • G551A
  • G590A
  • G664A
  • T697C
  • T1048C
  • G1050A
  • A1053C
  • G1077A
    • Deletions
    4592, 7465
    Insertions
    ins_547:AA

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:T13A

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:G106E
  • G:I134K
  • G:T137A
  • G:L142S
  • G:R151H
  • G:K223R
  • G:G224E
  • G:V225A
  • G:G232E
  • G:S243I
  • G:Y297H
  • G:Y304H
  • G:E308K

    • L

  • L:S100L
  • L:N143D
  • L:L161I
  • L:N167T
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:R1647K
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:M1742I
  • L:I1800L
  • L:N2025S
  • L:S2076G

    • M

  • M:M43I
  • M:M134I

    • N

  • N:V352A

    • NS1

  • NS1:N68H

    • P

  • P:L55P
    • Deletions
    None
    Insertions
    None