GS_00D82LW.1

Display Name: USA/GS_00D82LW.1/2025-02-11
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV246674.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-17 02:53:49 UTC
Date released
2025-03-17 02:54:35 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47265039
INSDC accession
PV246674.1
NCBI release date
2025-03-16
NCBI update date
2025-03-16
SRA run accession
SRR32610686

Alignment states and QC metrics

Completeness
96.39%
Length
15046
Total ambiguous nucs
2
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
211
Total unknown nucs
369

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-11
Isolate name
MN-MDH-RSVA-02206

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.1

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • G198A
  • C269T
  • A399G
  • T775C
  • C782T
  • G1000A
  • C1012T
  • T1035A
  • C1046T
  • G1050A
  • C1203T
  • T1218C
  • A1329G
  • T1359C
  • T1389C
  • T1422C
    • Deletions
    4174
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:K42R

    • G

  • G:P71L
  • G:A79V
  • G:H90Y
  • G:G98E
  • G:L101F
  • G:I134K
  • G:L142S
  • G:G224E
  • G:S243I
  • G:K262E
  • G:I265L
  • G:D284G
  • G:Y304H
  • G:T320A
  • G:*322R

    • L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:M1648I
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725R
  • L:G1731D
  • L:S1789F
  • L:Y2163N

    • M

  • M:K25R
  • M:M43I

    • N

  • N:V352A

    • NS1

  • NS1:P67L

    • P

  • P:L55P
  • P:A207T

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None