GS_00D82AH.1

Display Name: USA/GS_00D82AH.1/2025-02-12
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV246664.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-17 02:53:49 UTC
Date released
2025-03-17 02:54:35 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47265029
INSDC accession
PV246664.1
NCBI release date
2025-03-16
NCBI update date
2025-03-16
SRA run accession
SRR32610697

Alignment states and QC metrics

Completeness
89.92%
Length
15048
Total ambiguous nucs
2
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
1
Total SNPs
210
Total unknown nucs
1355

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-12
Isolate name
MN-MDH-RSVA-02196

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.3.2

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C156T
  • C183T
  • A280G
  • G587T
  • G590A
  • C604T
  • A608G
  • G664A
  • A682G
  • G1034A
  • G1050A
  • G1077A
  • G1191A
  • A1197C
  • T1359C
  • T1413A
  • T1422C
    • Deletions
    None
    Insertions
    ins_3154:A

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:T12I
  • F:S276N

    • G

  • G:P71L
  • G:H90Y
  • G:L97F
  • G:G98V
  • G:L101S
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:G224E
  • G:P230T
  • G:S243T
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:D284G
  • G:Y304H
  • G:L314P

    • L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:G1550S
  • L:I1653V
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • N

  • N:V352A

    • NS1

  • NS1:I71V

    • NS2

  • NS2:T4A

    • P

  • P:T92I
    • Deletions
    None
    Insertions
    None