GS_00D827P.1

Display Name: USA/GS_00D827P.1/2025-02-12
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV246661.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-17 02:53:49 UTC
Date released
2025-03-17 02:54:35 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47265026
INSDC accession
PV246661.1
NCBI release date
2025-03-16
NCBI update date
2025-03-16
SRA run accession
SRR32610700

Alignment states and QC metrics

Completeness
91.94%
Length
14854
Total ambiguous nucs
1
Total deleted nucs
5
Total frame shifts
0
Total inserted nucs
0
Total SNPs
211
Total unknown nucs
860

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-12
Isolate name
MN-MDH-RSVA-02193

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.5.2

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • T246C
  • C516T
  • G637A
  • T697C
  • G747A
  • A940C
  • A1009G
  • C1012T
  • A1021G
  • T1028C
  • G1050A
  • A1051C
  • T1359C
  • G1368A
  • T1380C
  • T1422C
    • Deletions
    582, 4592, 7516-7518
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:A103T
  • F:T122A
  • F:E294K

    • G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:I134K
  • G:R151H
  • G:P206Q
  • G:K209R
  • G:G224E
  • G:T235I
  • G:S243I
  • G:L248I
  • G:S250F
  • G:K262E
  • G:I265L
  • G:D284G
  • G:G296S
  • G:V303A

    • L

  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:N1723G
  • L:E1725G
  • L:G1731D
  • L:A1927T
  • L:V1943D

    • M

  • M:M73L

    • N

  • N:V352A

    • NS2

  • NS2:R50K

    • P

  • P:L55P
  • P:T69I

    • SH

  • SH:I27M
    • Deletions
    None
    Insertions
    None