GS_00D81RM.1

Display Name: USA/GS_00D81RM.1/2025-02-12
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV246645.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-17 02:53:49 UTC
Date released
2025-03-17 02:54:35 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47265010
INSDC accession
PV246645.1
NCBI release date
2025-03-16
NCBI update date
2025-03-16
SRA run accession
SRR32610745

Alignment states and QC metrics

Completeness
96.37%
Length
15046
Total ambiguous nucs
4
Total deleted nucs
1
Total frame shifts
0
Total inserted nucs
0
Total SNPs
219
Total unknown nucs
370

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-12
Isolate name
MN-MDH-RSVA-02177

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.1

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • G198A
  • T246A
  • C379T
  • A399G
  • G1000A
  • C1012T
  • T1035A
  • C1046A
  • T1048C
  • G1050A
  • A1080G
  • A1110G
  • T1359C
  • G1662A
  • T1668C
  • T1671C
    • Deletions
    4592
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:S377N

    • G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:A116V
  • G:I134K
  • G:L142S
  • G:P143L
  • G:R151C
  • G:G224E
  • G:V225A
  • G:P234L
  • G:S243I
  • G:L247P
  • G:K262E
  • G:I265L
  • G:G272D
  • G:Y273H
  • G:P276S

    • L

  • L:P171L
  • L:S240N
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:I1656V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:N1748S
  • L:S1789F
  • L:Y2163N

    • M

  • M:M43I

    • N

  • N:Y216H
  • N:V352A

    • P

  • P:L55P
  • P:T72I

    • SH

  • SH:I38S
    • Deletions
    None
    Insertions
    None