GS_00D81MV.1

Display Name: USA/GS_00D81MV.1/2025-02-13
Kunerth, H. D.; Plumb, M.; Namugenyi, S.; Evans, D.; Bohnkers-Voels, L.; Strain, A.

Submission details

Submission ID
PV246641.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-17 02:53:49 UTC
Date released
2025-03-17 02:54:35 UTC

Authors

Author affiliations
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

INSDC

Bioproject accession
PRJNA1048457
Biosample accession
SAMN47265006
INSDC accession
PV246641.1
NCBI release date
2025-03-16
NCBI update date
2025-03-16
SRA run accession
SRR32610693

Alignment states and QC metrics

Completeness
93.94%
Length
15050
Total ambiguous nucs
4
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
3
Total SNPs
193
Total unknown nucs
740

Sample details

Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2025-02-13
Isolate name
MN-MDH-RSVA-02173

Host

Host name scientific
Homo sapiens
Host taxon id
9606

Clade & Lineage

Lineage
A.D.3.3

Nucleotide mutations

Mutations called relative to the NC_006432.1 reference

Substitutions

  • C90T
  • C183T
  • A354G
  • G587T
  • G1034A
  • G1050A
  • G1077A
  • T1088A
  • T1137C
  • T1218C
  • T1326C
  • T1359C
  • G1368A
  • T1413A
  • T1422C
  • A1599C
  • T1659A
  • C1788T
    • Deletions
    None
    Insertions
    ins_15115:TT, ins_3154:A

    Amino acid mutations

    Mutations called relative to the NC_006432.1 reference

    Substitutions

    F

  • F:T12I
  • F:S24F
  • F:K327N

    • G

  • G:L23M
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:K204N
  • G:G224E
  • G:D284G
  • G:E308K

    • L

  • L:P171L
  • L:K180R
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D

    • M

  • M:M134L

    • N

  • N:V352A

    • P

  • P:T92M
  • P:S215P
    • Deletions
    None
    Insertions
    None