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GS_00D6HPD.1
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Display Name: USA/GS_00D6HPD.1/2025-02-04
Dohrn,
C.; Dunn,
D.; Gauger,
P. C.
Submission details
Submission ID
PV240834.1.seg4/PV240835.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-03-11 11:05:23 UTC
Date released
2025-03-11 14:51:32 UTC
Authors
Author affiliations
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Clade
Clade ha
unassigned
Clade na
unassigned
Alignment states and QC metrics seg4
Completeness seg4
97.93%
Length seg4
1701
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
109
Total unknown nucs seg4
0
Alignment states and QC metrics seg6
Completeness seg6
98.19%
Length seg6
1410
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
166
Total unknown nucs seg6
0
Sample details
Collection country
USA
Collection subdivision level 1
Kansas
Collection date
2025-02-04
Isolate name
A02858355
Host
Host name scientific
Sus scrofa
Host taxon id
9823
INSDC
INSDC accession seg4
PV240834.1
INSDC accession seg6
PV240835.1
NCBI release date
2025-03-06
INSDC seg4
Subtype seg4
H3
INSDC seg6
Subtype seg6
N2
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
seg4:
G
23
A
seg4:
T
42
C
seg4:
G
56
A
seg4:
C
76
A
seg4:
C
77
T
seg4:
A
80
T
seg4:
T
83
C
seg4:
G
91
A
seg4:
C
94
T
seg4:
G
113
A
seg4:
A
125
G
seg4:
A
165
G
seg4:
A
206
T
seg4:
C
208
A
seg4:
G
214
A
seg4:
G
222
A
seg4:
T
230
C
seg4:
T
233
C
Show more
seg6
seg6:
A
27
G
seg6:
G
40
A
seg6:
C
48
T
seg6:
A
52
C
seg6:
T
55
G
seg6:
A
58
G
seg6:
A
63
G
seg6:
C
66
T
seg6:
T
70
C
seg6:
C
72
T
seg6:
T
80
C
seg6:
C
83
T
seg6:
C
84
T
seg6:
C
87
T
seg6:
T
88
C
seg6:
C
98
A
seg6:
T
111
C
seg6:
G
117
T
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
P
4
H
HA1:
S
9
N
HA1:
T
10
M
HA1:
I
34
V
HA1:
T
48
K
HA1:
G
50
E
HA1:
D
53
N
HA1:
I
58
V
HA1:
K
82
S
HA1:
Y
94
H
HA1:
V
112
I
HA1:
N
121
T
HA1:
D
122
N
HA1:
N
133
D
HA1:
K
158
N
HA1:
F
159
S
HA1:
N
165
E
HA1:
K
173
Q
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
N
116
S
HA2:
R
121
K
HA2:
N
168
S
HA2:
G
181
E
HA2:
R
216
K
NA
NA:
I
8
M
NA:
V
13
I
NA:
I
17
L
NA:
S
18
A
NA:
T
19
A
NA:
I
20
M
NA:
F
23
L
NA:
I
26
T
NA:
A
27
V
NA:
T
32
N
NA:
K
38
N
NA:
Y
40
C
NA:
F
42
C
NA:
N
43
H
NA:
S
44
C
NA:
M
51
I
NA:
L
52
M
NA:
I
62
T
Show more
SigPep
SigPep:
Y
9
H
Deletions
None
Insertions
None
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