Display Name: USA/GS_00D6HNF.1/2025-02-04
Dohrn, C.; Dunn, D.; Gauger, P. C.

Submission details

Submission ID
PV240832.1.seg4/PV240833.1.seg6
Date submitted
2025-03-11 11:05:23 UTC
Date released
2025-03-11 14:51:32 UTC

Authors

Author affiliations
Iowa State University Veterinary Diagnostic Lab, Bioinformatics

Clade

Clade ha
unassigned
Clade na
unassigned

Alignment states and QC metrics seg4

Completeness seg4
97.93%
Length seg4
1701
Total ambiguous nucs seg4
0
Total deleted nucs seg4
0
Total frame shifts seg4
0
Total inserted nucs seg4
0
Total SNPs seg4
127
Total unknown nucs seg4
0

Alignment states and QC metrics seg6

Completeness seg6
98.19%
Length seg6
1410
Total ambiguous nucs seg6
0
Total deleted nucs seg6
0
Total frame shifts seg6
0
Total inserted nucs seg6
0
Total SNPs seg6
150
Total unknown nucs seg6
0

Sample details

Collection country
USA
Collection subdivision level 1
North Carolina
Collection date
2025-02-04
Isolate name
A02858354

Host

Host name scientific
Sus scrofa
Host taxon id

INSDC

INSDC accession seg4
INSDC accession seg6
NCBI release date
2025-03-06

INSDC seg4

Subtype seg4
H3

INSDC seg6

Subtype seg6
N2

Nucleotide mutations

Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

Substitutions

seg4

  • seg4:G23A
  • seg4:T26C
  • seg4:C34T
  • seg4:T42C
  • seg4:C44A
  • seg4:G52A
  • seg4:T60C
  • seg4:A80T
  • seg4:G91A
  • seg4:C94T
  • seg4:G113A
  • seg4:A125G
  • seg4:A140G
  • seg4:A156G
  • seg4:T185C
  • seg4:G199A
  • seg4:C202T
  • seg4:T212A
  • seg6

  • seg6:G30A
  • seg6:T41C
  • seg6:T45G
  • seg6:C50T
  • seg6:T55G
  • seg6:T70C
  • seg6:C72T
  • seg6:A79G
  • seg6:T88C
  • seg6:A91G
  • seg6:T96A
  • seg6:G100A
  • seg6:A120G
  • seg6:T121C
  • seg6:A126T
  • seg6:T128G
  • seg6:C132T
  • seg6:G153A
  • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

    Substitutions

    HA1

  • HA1:S9N
  • HA1:T10M
  • HA1:I25M
  • HA1:N31D
  • HA1:S45N
  • HA1:S46F
  • HA1:G50E
  • HA1:H56Y
  • HA1:E62G
  • HA1:K82N
  • HA1:Y94H
  • HA1:N96D
  • HA1:D122K
  • HA1:N133D
  • HA1:T135A
  • HA1:R142K
  • HA1:N144S
  • HA1:N145S
  • HA2

  • HA2:I32R
  • HA2:N46D
  • HA2:L102M
  • HA2:R121K
  • HA2:D164N
  • HA2:G181E
  • HA2:I193M
  • HA2:R216K
  • NA

  • NA:V13A
  • NA:T16I
  • NA:S18A
  • NA:F23L
  • NA:I26V
  • NA:I30V
  • NA:V33I
  • NA:Y40H
  • NA:E41D
  • NA:F42C
  • NA:L52I
  • NA:I62K
  • NA:I73V
  • NA:L81P
  • NA:A82S
  • NA:N93D
  • NA:T95A
  • NA:P126L
  • SigPep

  • SigPep:A6V
  • SigPep:Y9Q
  • SigPep:C12Y
  • SigPep:F15L
  • Deletions
    None
    Insertions
    None